VARIANT ANNOTATION AND INTERPRETATION
Advances in Next Generation Sequencing will make precision medicine a worldwide phenomenon in coming years. We designed a very special database for ALAPY Genome Explorer that provides affordable, flexible and fast data analysis. Start using it today and together we will make personalized medicine a global reality.
ACCURACY AND GLOBAL DATA
Currently, AGx can use the following sources of data, with more sources being added on a regular basis:
• 1000 genomes project
We can plugin special public and commercial sources for you like Ensemble, HGMD, OMIM and many other. You name it.
For variant scoring, we use SIFT, PolyPhen-2 , ancestral alleles and predicted consequences of the mutation, its zygosity state as well as all the data you provided in the vcf file, with easy to filter and display access. More scoring functions are coming.
BREADTH OF APPLICATION AND FLEXIBILITY
Currently, this database can be used to analyze a single vcf sample, compare tumour/normal samples and perform trio analysis.
A standard inheritance models like Autosomal dominant, can be currently used.
The model can be customized and improved depending on user’s preferences.
We created compound heterozygous inheritance model.
We will be happy to add more models by request.
CLOUD or IN-HOUSE SOLUTION
ALAPY Genome Explorer can be used on your own servers, or can be provided as a cloud service with worldwide access.
All our servers and solutions are HIPPA compliant.
ANALYSIS IMPROVEMENT AND SPEED
We value time of our customers and decided to radically rethink classical approaches to genetic analysis software using latest achievements in computer science and experience of each of our database architects, big data specialists and software developers. In the core of our product, we use an innovative database developed by our data lab from the ground up. We call it ALAPY Genome DB.
Development of this database gave us unique capacity to perform much deeper and faster analysis than before. We can compare and analyze your sample with a plethora of data, including myriads of your other samples in less than 10 second. We welcome you to our new reality where you can get to the final results faster then ever.
Analyses from your history are available immediately and you can export them in many popular formats like text, sql and csv, with more in the future, including pdf reports. Moreover, history of your exports gives you access to this files from any device with an internet connection.